4LGD	Signaling Protein	date	Jun 27, 2013
title	Structural Basis For Autoactivation Of Human Mst2 Kinase And Regulation By Rassf5
authors	X.Luo, L.Ni, D.R.Tomchick
compound		source
Molecule: Serinethreonine-Protein Kinase 3 Chain: A, B, C, D Fragment: Kinase Domain, Sarah Domain, Unp Residues 1-313, Synonym: Mammalian Ste20-Like Protein Kinase 2, Mst-2, Ste2 Kinase Mst2, Serinethreonine-Protein Kinase Krs-1, Serine Protein Kinase 3 36kda Subunit, Mst2n, Serinethreonine-Pr Kinase 3 20kda Subunit, Mst2c; Ec: 2.7.11.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Stk3, Krs1, Mst2 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet29
Molecule: Ras Association Domain Family Member 5, Rassf5 Chain: E, F, G, H Fragment: Sarah Domain, Unp Residues 365-413 Synonym: New Ras Effector 1, Regulator For Cell Adhesion An Polarization Enriched In Lymphoid Tissues, Rapl; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rassf5, Nore1, Rapl Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-6p
symmetry	Space Group: C 1 2 1	R_factor 0.199 R_Free 0.244
crystal cell	length a length b length c angle alpha angle beta angle gamma 123.403 237.136 95.862 90.00 100.70 90.00
method	X-Ray Diffraction	resolution	3.05 Å
ligand	ANP, MG, NA, SO4	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A, B, C, D F, E, H, G
Primary reference	Structural Basis for Autoactivation of Human Mst2 Kinase and Its Regulation by RASSF5., Ni L, Li S, Yu J, Min J, Brautigam CA, Tomchick DR, Pan D, Luo X, Structure. 2013 Aug 20. pii: S0969-2126(13)00258-X. doi:, 10.1016/j.str.2013.07.008. PMID:23972470

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (813 Kb) [Save to disk] Biological Unit Coordinates (4lgd.pdb1.gz) 209 Kb Biological Unit Coordinates (4lgd.pdb2.gz) 208 Kb Biological Unit Coordinates (4lgd.pdb3.gz) 197 Kb Biological Unit Coordinates (4lgd.pdb4.gz) 197 Kb Biological Unit Coordinates (4lgd.pdb5.gz) 402 Kb Biological Unit Coordinates (4lgd.pdb6.gz) 401 Kb LPC: Ligand-Protein Contacts for 4LGD CSU: Contacts of Structural Units for 4LGD Structure Factors (405 Kb) Retrieve 4LGD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4LGD from S2C, [Save to disk] Re-refined 4lgd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4LGD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4LGD

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 4LGD, from MSDmotif at EBI Fold representative 4lgd from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4lgd_H] [4lgd_A] [4lgd_D] [4lgd_F] [4lgd_B] [4lgd_E] [4lgd] [4lgd_G] [4lgd_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4LGD: [S_TKc ] by SMART

Other resources with information on 4LGD

Community annotation for 4LGD at PDBWiki (http://pdbwiki.org)

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