4LGD Signaling Protein date Jun 27, 2013
title Structural Basis For Autoactivation Of Human Mst2 Kinase And Regulation By Rassf5
authors X.Luo, L.Ni, D.R.Tomchick
compound source
Molecule: Serinethreonine-Protein Kinase 3
Chain: A, B, C, D
Fragment: Kinase Domain, Sarah Domain, Unp Residues 1-313,
Synonym: Mammalian Ste20-Like Protein Kinase 2, Mst-2, Ste2 Kinase Mst2, Serinethreonine-Protein Kinase Krs-1, Serine Protein Kinase 3 36kda Subunit, Mst2n, Serinethreonine-Pr Kinase 3 20kda Subunit, Mst2c;
Ec: 2.7.11.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Stk3, Krs1, Mst2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet29

Molecule: Ras Association Domain Family Member 5, Rassf5
Chain: E, F, G, H
Fragment: Sarah Domain, Unp Residues 365-413
Synonym: New Ras Effector 1, Regulator For Cell Adhesion An Polarization Enriched In Lymphoid Tissues, Rapl;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rassf5, Nore1, Rapl
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p
symmetry Space Group: C 1 2 1
R_factor 0.199 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
123.403 237.136 95.862 90.00 100.70 90.00
method X-Ray Diffractionresolution 3.05 Å
ligand ANP, MG, NA, SO4 enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B, C, D


F, E, H, G


Primary referenceStructural Basis for Autoactivation of Human Mst2 Kinase and Its Regulation by RASSF5., Ni L, Li S, Yu J, Min J, Brautigam CA, Tomchick DR, Pan D, Luo X, Structure. 2013 Aug 20. pii: S0969-2126(13)00258-X. doi:, 10.1016/j.str.2013.07.008. PMID:23972470
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (813 Kb) [Save to disk]
  • Biological Unit Coordinates (4lgd.pdb1.gz) 209 Kb
  • Biological Unit Coordinates (4lgd.pdb2.gz) 208 Kb
  • Biological Unit Coordinates (4lgd.pdb3.gz) 197 Kb
  • Biological Unit Coordinates (4lgd.pdb4.gz) 197 Kb
  • Biological Unit Coordinates (4lgd.pdb5.gz) 402 Kb
  • Biological Unit Coordinates (4lgd.pdb6.gz) 401 Kb
  • LPC: Ligand-Protein Contacts for 4LGD
  • CSU: Contacts of Structural Units for 4LGD
  • Structure Factors (405 Kb)
  • Retrieve 4LGD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LGD from S2C, [Save to disk]
  • Re-refined 4lgd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4LGD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4LGD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4LGD, from MSDmotif at EBI
  • Fold representative 4lgd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4lgd_H] [4lgd_A] [4lgd_D] [4lgd_F] [4lgd_B] [4lgd_E] [4lgd] [4lgd_G] [4lgd_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4LGD: [S_TKc ] by SMART
  • Other resources with information on 4LGD
  • Community annotation for 4LGD at PDBWiki (http://pdbwiki.org)

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