4LGT Crystal structure of the catalytic domain of RluB in complex with a 21-nucleotide RNA substrate date
authors Czudnochowski, N., Finer-Moore, J.S., Stroud, R.M.
compound source
symmetry
R_factor
R_Free 0.2034
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.30
ligand FHU, OCS enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D


Primary referenceThe mechanism of pseudouridine synthases from a covalent complex with RNA, and alternate specificity for U2605 versus U2604 between close homologs., Czudnochowski N, Ashley GW, Santi DV, Alian A, Finer-Moore J, Stroud RM, Nucleic Acids Res. 2013 Nov 7. PMID:24214967
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (301 Kb) [Save to disk]
  • Biological Unit Coordinates (4lgt.pdb1.gz) 152 Kb
  • Biological Unit Coordinates (4lgt.pdb2.gz) 145 Kb
  • LPC: Ligand-Protein Contacts for 4LGT
  • CSU: Contacts of Structural Units for 4LGT
  • Structure Factors (2192 Kb)
  • Retrieve 4LGT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LGT from S2C, [Save to disk]
  • Re-refined 4lgt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4LGT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4LGT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4LGT, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4lgt_D] [4lgt] [4lgt_A] [4lgt_F] [4lgt_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4LGT: [S4 ] by SMART
    • Other resources with information on 4LGT
  • Community annotation for 4LGT at PDBWiki (http://pdbwiki.org)

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