4LIJ Rna Binding Protein date Jul 02, 2013
title Crystal Structure Of A Far Upstream Element (Fuse) Binding P (Fubp1) From Homo Sapiens At 1.95 A Resolution
authors Joint Center For Structural Genomics (Jcsg), Partnership For Biology, Partnership For T-Cell Biology (Tcell)
compound source
Molecule: Far Upstream Element-Binding Protein 1
Chain: A, B, C
Fragment: Unp Residues 86-174
Synonym: Fbp, Fuse-Binding Protein 1, Dna Helicase V, Hdh V
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bc017247, Fubp1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Hk100
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Speedet
symmetry Space Group: P 43 21 2
R_factor 0.172 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.810 86.810 84.170 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand MSE, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (4lij.pdb1.gz) 80 Kb
  • Biological Unit Coordinates (4lij.pdb2.gz) 159 Kb
  • LPC: Ligand-Protein Contacts for 4LIJ
  • CSU: Contacts of Structural Units for 4LIJ
  • Structure Factors (5976 Kb)
  • Retrieve 4LIJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LIJ from S2C, [Save to disk]
  • Re-refined 4lij structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4LIJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4LIJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4LIJ, from MSDmotif at EBI
  • Fold representative 4lij from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4lij] [4lij_A] [4lij_C] [4lij_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4LIJ: [KH ] by SMART
  • Other resources with information on 4LIJ
  • Community annotation for 4LIJ at PDBWiki (http://pdbwiki.org)

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