4LJO Structure of an active ligase (HOIP)/ubiquitin transfer complex date
authors Rana, R.R., Stieglitz, B., Koliopoulos, M.G., Morris-Davies, A.C., Christodoulou, E., Howell, S., Brown, N.R., Rittinger, K.
compound source
symmetry
R_factor
R_Free 0.2124
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.56
ligand IMD, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for ligase-specific conjugation of linear ubiquitin chains by HOIP., Stieglitz B, Rana RR, Koliopoulos MG, Morris-Davies AC, Schaeffer V, Christodoulou E, Howell S, Brown NR, Dikic I, Rittinger K, Nature. 2013 Oct 20. doi: 10.1038/nature12638. PMID:24141947
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk]
  • Biological Unit Coordinates (4ljo.pdb1.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 4LJO
  • CSU: Contacts of Structural Units for 4LJO
  • Structure Factors (470 Kb)
  • Retrieve 4LJO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LJO from S2C, [Save to disk]
  • Re-refined 4ljo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4LJO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4LJO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4LJO, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ljo_B] [4ljo_A] [4ljo]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4LJO: [IBR] [UBQ ] by SMART
  • Other resources with information on 4LJO
  • Community annotation for 4LJO at PDBWiki (http://pdbwiki.org)

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