4LJX Transcription date Jul 05, 2013
title Crystal Structure Of An At-Rich Interactive Domain-Containin 3a (Arid3a) From Homo Sapiens At 2.21 A Resolution
authors Joint Center For Structural Genomics (Jcsg), Partnership For Biology (Stemcell)
compound source
Molecule: At-Rich Interactive Domain-Containing Protein 3a
Chain: A, B
Fragment: Arid Domain Residues 216-351
Synonym: Arid Domain-Containing Protein 3a, B-Cell Regulato Transcription, Bright, Dead Ringer-Like Protein 1, E2f-Bind Protein 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arid3a, Bc060828, Dril1, Dril3, Drx, E2fbp1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Pb1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Speedet
symmetry Space Group: P 1
R_factor 0.182 R_Free 0.202
length a length b length c angle alpha angle beta angle gamma
34.924 43.092 44.894 108.12 82.22 98.17
method X-Ray Diffractionresolution 2.21 Å
ligand MSE enzyme
A, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (4ljx.pdb1.gz) 43 Kb
  • Biological Unit Coordinates (4ljx.pdb2.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 4LJX
  • CSU: Contacts of Structural Units for 4LJX
  • Structure Factors (548 Kb)
  • Retrieve 4LJX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LJX from S2C, [Save to disk]
  • Re-refined 4ljx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4LJX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4LJX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4LJX, from MSDmotif at EBI
  • Fold representative 4ljx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ljx_B] [4ljx] [4ljx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4LJX: [ARID] [BRIGHT ] by SMART
  • Other resources with information on 4LJX
  • Community annotation for 4LJX at PDBWiki (http://pdbwiki.org)

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