4LK3 Crystal structure of Human UDP-xylose synthase R236A substitution date
authors Walsh, R.M., Polizzi, S.J., Wood, Z.A.
compound source
symmetry
R_factor
R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.64
ligand NAD, POP, SO4, UDP, UGA enzyme
Primary referenceMan o' war mutation in UDP-alpha-D-xylose synthase favors the abortive catalytic cycle and uncovers a latent potential for hexamer formation., Walsh RM Jr, Polizzi SJ, Kadirvelraj R, Howard WW, Wood ZA, Biochemistry. 2015 Jan 27;54(3):807-19. doi: 10.1021/bi501357c. Epub 2015 Jan 13. PMID:25521717
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (559 Kb) [Save to disk]
  • Biological Unit Coordinates (4lk3.pdb1.gz) 544 Kb
  • LPC: Ligand-Protein Contacts for 4LK3
  • CSU: Contacts of Structural Units for 4LK3
  • Structure Factors (596 Kb)
  • Retrieve 4LK3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LK3 from S2C, [Save to disk]
  • Re-refined 4lk3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4LK3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4LK3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4LK3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4lk3_B] [4lk3_E] [4lk3] [4lk3_C] [4lk3_D] [4lk3_F] [4lk3_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4LK3
  • Community annotation for 4LK3 at PDBWiki (http://pdbwiki.org)

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