OCA Atlas for 4LKD

4LKD

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CA, GAL, PHB

enzyme

Gene
Ontology

Chain	Function	Process	Component
F, A, E, B, C, G, D, H

Primary reference

Structure-Based Optimization of the Terminal Tripeptide in Glycopeptide Dendrimer Inhibitors of Pseudomonas aeruginosa Biofilms Targeting LecA., Kadam RU, Bergmann M, Garg D, Gabrieli G, Stocker A, Darbre T, Reymond JL, Chemistry. 2013 Dec 9;19(50):17054-63. doi: 10.1002/chem.201302587. Epub 2013 Nov, 4. PMID:24307364

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (179 Kb) [Save to disk]

Biological Unit Coordinates (4lkd.pdb1.gz) 88 Kb

Biological Unit Coordinates (4lkd.pdb2.gz) 87 Kb

LPC: Ligand-Protein Contacts for 4LKD

CSU: Contacts of Structural Units for 4LKD

Structure Factors (1456 Kb)

Retrieve 4LKD in mmCIF format [Save to disk]

Re-refined 4lkd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4LKD in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4lkd] [4lkd_A] [4lkd_B] [4lkd_C] [4lkd_D] [4lkd_E] [4lkd_F] [4lkd_G] [4lkd_H] [4lkd_I] [4lkd_J] [4lkd_K] [4lkd_L] [4lkd_M] [4lkd_N] [4lkd_O] [4lkd_P]

SWISS-PROT database:

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