4LLF Crystal structure of Cucumber Necrosis Virus date
authors Smith, T.
compound source
symmetry
R_factor
R_Free 0.2418
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.89
ligand CA, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, O, J, N, P, K, E, B, H, M, D, I, G, L


Primary referenceAtomic structure of cucumber necrosis virus and the role of the capsid in vector transmission., Li M, Kakani K, Katpally U, Johnson S, Rochon D, Smith TJ, J Virol. 2013 Nov;87(22):12166-75. doi: 10.1128/JVI.01965-13. Epub 2013 Sep 4. PMID:24006433
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (698 Kb) [Save to disk]
  • Biological Unit Coordinates (4llf.pdb1.gz) 8143 Kb
  • LPC: Ligand-Protein Contacts for 4LLF
  • CSU: Contacts of Structural Units for 4LLF
  • Structure Factors (1446 Kb)
  • Retrieve 4LLF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LLF from S2C, [Save to disk]
  • Re-refined 4llf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4LLF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4LLF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4LLF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4llf_L] [4llf_B] [4llf_P] [4llf_F] [4llf_K] [4llf] [4llf_M] [4llf_O] [4llf_E] [4llf_I] [4llf_H] [4llf_D] [4llf_N] [4llf_G] [4llf_A] [4llf_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4LLF
  • Community annotation for 4LLF at PDBWiki (http://pdbwiki.org)

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