4LOO Structural basis of autoactivation of p38 alpha induced by TAB1 (Monoclinic crystal form) date 2013-07-13
authors Chaikuad, A., DeNicola, G.F., Krojer, T., Allerston, C.K., Delft, F.von., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Marber, M.S., Knapp, S., SGC, Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free 0.25024
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.95
ligand SB4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMechanism and consequence of the autoactivation of p38alpha mitogen-activated protein kinase promoted by TAB1., De Nicola GF, Martin ED, Chaikuad A, Bassi R, Clark J, Martino L, Verma S, Sicard P, Tata R, Atkinson RA, Knapp S, Conte MR, Marber MS, Nat Struct Mol Biol. 2013 Sep 15. doi: 10.1038/nsmb.2668. PMID:24037507
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk]
  • Biological Unit Coordinates (4loo.pdb1.gz) 127 Kb
  • LPC: Ligand-Protein Contacts for 4LOO
  • CSU: Contacts of Structural Units for 4LOO
  • Structure Factors (390 Kb)
  • Retrieve 4LOO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LOO from S2C, [Save to disk]
  • Re-refined 4loo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4LOO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4LOO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4LOO, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4loo_A] [4loo] [4loo_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4LOO: [S_TKc ] by SMART
    • Other resources with information on 4LOO
  • Community annotation for 4LOO at PDBWiki (http://pdbwiki.org)

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