4LOR C1s CUB1-EGF-CUB2 in complex with a collagen-like peptide from C1q date 2013-07-13
authors Wallis, R., Girija, U.Venkatraman., Moody, P.C.E., Marshall, J.E.
compound source
symmetry
R_factor
R_Free 0.2520
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand CA, HYP, NA, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis of the C1q/C1s interaction and its central role in assembly of the C1 complex of complement activation., Venkatraman Girija U, Gingras AR, Marshall JE, Panchal R, Sheikh MA, Gal P, Schwaeble WJ, Mitchell DA, Moody PC, Wallis R, Proc Natl Acad Sci U S A. 2013 Aug 20;110(34):13916-20. doi:, 10.1073/pnas.1311113110. Epub 2013 Aug 6. PMID:23922389
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • Biological Unit Coordinates (4lor.pdb1.gz) 112 Kb
  • LPC: Ligand-Protein Contacts for 4LOR
  • CSU: Contacts of Structural Units for 4LOR
  • Structure Factors (745 Kb)
  • Retrieve 4LOR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LOR from S2C, [Save to disk]
  • Re-refined 4lor structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4LOR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4LOR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4LOR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4lor_A] [4lor_C] [4lor_B] [4lor] [4lor_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4LOR: [CUB] [EGF_CA ] by SMART
  • Other resources with information on 4LOR
  • Community annotation for 4LOR at PDBWiki (http://pdbwiki.org)

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