4LQ3 Crystal structure of human norovirus RNA-dependent RNA-polymerase bound to the inhibitor PPNDS date
authors Milani, M., Tarantino, D., Mastrangelo, E., Croci, R.
compound source
symmetry
R_factor
R_Free 0.28535
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
ligand 20V, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • RNA-directed 5'-3' RNA polym...


    • Primary referenceNaphthalene-sulfonate inhibitors of human norovirus RNA-dependent RNA-polymerase., Tarantino D, Pezzullo M, Mastrangelo E, Croci R, Rohayem J, Robel I, Bolognesi M, Milani M, Antiviral Res. 2014 Feb;102:23-8. doi: 10.1016/j.antiviral.2013.11.016. Epub 2013, Dec 4. PMID:24316032
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (4lq3.pdb1.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 4LQ3
  • CSU: Contacts of Structural Units for 4LQ3
  • Structure Factors (287 Kb)
  • Retrieve 4LQ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LQ3 from S2C, [Save to disk]
  • Re-refined 4lq3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4LQ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4LQ3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4LQ3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4lq3] [4lq3_A] [4lq3_R]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4LQ3
  • Community annotation for 4LQ3 at PDBWiki (http://pdbwiki.org)

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