4LUD Transferase Transferase Inhibitor date Jul 25, 2013
title Crystal Structure Of Hck In Complex With The Fluorescent Com Skf86002
authors L.J.Parker, A.Tanaka, N.Handa, K.Honda, Y.Tomabechi, M.Shirouzu, S
compound source
Molecule: Tyrosine-Protein Kinase Hck
Chain: A, B
Fragment: Unp Residues 81-526
Synonym: Hematopoietic Cell Kinase, Hemopoietic Cell Kinase Hckp60-Hck, P59hck, P61hck;
Ec: 2.7.10.2
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hck
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 1 21 1
R_factor 0.212 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.300 73.400 180.290 90.00 96.77 90.00
method X-Ray Diffractionresolution 2.85 Å
ligand CA, CL, GOL, PTR, SK8 enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (295 Kb) [Save to disk]
  • Biological Unit Coordinates (4lud.pdb1.gz) 147 Kb
  • Biological Unit Coordinates (4lud.pdb2.gz) 144 Kb
  • LPC: Ligand-Protein Contacts for 4LUD
  • CSU: Contacts of Structural Units for 4LUD
  • Structure Factors (235 Kb)
  • Retrieve 4LUD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LUD from S2C, [Save to disk]
  • Re-refined 4lud structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4LUD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4LUD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4LUD, from MSDmotif at EBI
  • Fold representative 4lud from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4lud_A] [4lud_B] [4lud]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4LUD: [SH2] [SH3] [TyrKc ] by SMART
  • Other resources with information on 4LUD
  • Community annotation for 4LUD at PDBWiki (http://pdbwiki.org)

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