4LVM MobM Relaxase Domain (MOBV; Mob_Pre) bound to plasmid pMV158 oriT DNA (23nt). Mn-bound crystal structure at pH 6.5 date
authors Pluta, R., Boer, D.R., Coll, M.
compound source
symmetry
R_factor
R_Free 0.29359
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.10
ligand CL, MG, MN, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceStructural basis of a histidine-DNA nicking/joining mechanism for gene transfer and promiscuous spread of antibiotic resistance., Pluta R, Boer DR, Lorenzo-Diaz F, Russi S, Gomez H, Fernandez-Lopez C, Perez-Luque R, Orozco M, Espinosa M, Coll M, Proc Natl Acad Sci U S A. 2017 Aug 8;114(32):E6526-E6535. doi:, 10.1073/pnas.1702971114. Epub 2017 Jul 24. PMID:28739894
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk]
  • Biological Unit Coordinates (4lvm.pdb1.gz) 82 Kb
  • Biological Unit Coordinates (4lvm.pdb2.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 4LVM
  • CSU: Contacts of Structural Units for 4LVM
  • Structure Factors (275 Kb)
  • Retrieve 4LVM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LVM from S2C, [Save to disk]
  • Re-refined 4lvm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4LVM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4LVM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4LVM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4lvm_C] [4lvm_F] [4lvm_D] [4lvm] [4lvm_E] [4lvm_A] [4lvm_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4LVM
  • Community annotation for 4LVM at PDBWiki (http://pdbwiki.org)

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