4LXM Crystal Structure of Human Beta Secretase in Complex with compound 12a date
authors Rondeau, J.M., Bourgier, E.
compound source
symmetry
R_factor
R_Free 0.2180
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand 1YU enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceDiscovery of cyclic sulfoxide hydroxyethylamines as potent and selective beta-site APP-cleaving enzyme 1 (BACE1) inhibitors: structure based design and in vivo reduction of amyloid beta-peptides., Rueeger H, Lueoend R, Machauer R, Veenstra SJ, Jacobson LH, Staufenbiel M, Desrayaud S, Rondeau JM, Mobitz H, Neumann U, Bioorg Med Chem Lett. 2013 Oct 1;23(19):5300-6. doi: 10.1016/j.bmcl.2013.07.071. , Epub 2013 Aug 9. PMID:23981898
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (200 Kb) [Save to disk]
  • Biological Unit Coordinates (4lxm.pdb1.gz) 68 Kb
  • Biological Unit Coordinates (4lxm.pdb2.gz) 68 Kb
  • Biological Unit Coordinates (4lxm.pdb3.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 4LXM
  • CSU: Contacts of Structural Units for 4LXM
  • Structure Factors (687 Kb)
  • Retrieve 4LXM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LXM from S2C, [Save to disk]
  • Re-refined 4lxm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4LXM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4LXM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4LXM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4lxm_B] [4lxm_A] [4lxm] [4lxm_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4LXM
  • Community annotation for 4LXM at PDBWiki (http://pdbwiki.org)

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