4LYL Crystal structure of uracil-DNA glycosylase from cod (Gadus morhua) in complex with the proteinaceous inhibitor UGI date
authors Assefa, N.G., Niiranen, L.M.K., Johnson, K.A., Leiros, H.K.S., Smalas, A.O., Willassen, N.P., Moe, E.
compound source
symmetry
R_factor
R_Free 0.2834
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.93
Gene
Ontology
ChainFunctionProcessComponent
F, N, L, J, P, B, H, D


K, E, M, C, A, O, I, G


Primary referenceStructural and biophysical analysis of interactions between cod and human uracil-DNA N-glycosylase (UNG) and UNG inhibitor (Ugi)., Assefa NG, Niiranen L, Johnson KA, Leiros HK, Smalas AO, Willassen NP, Moe E, Acta Crystallogr D Biol Crystallogr. 2014 Aug 1;70(Pt 8):2093-100. doi:, 10.1107/S1399004714011699. Epub 2014 Jul 25. PMID:25084329
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (427 Kb) [Save to disk]
  • Biological Unit Coordinates (4lyl.pdb1.gz) 58 Kb
  • Biological Unit Coordinates (4lyl.pdb2.gz) 58 Kb
  • Biological Unit Coordinates (4lyl.pdb3.gz) 57 Kb
  • Biological Unit Coordinates (4lyl.pdb4.gz) 57 Kb
  • Biological Unit Coordinates (4lyl.pdb5.gz) 58 Kb
  • Biological Unit Coordinates (4lyl.pdb6.gz) 56 Kb
  • Biological Unit Coordinates (4lyl.pdb7.gz) 57 Kb
  • Biological Unit Coordinates (4lyl.pdb8.gz) 57 Kb
  • Biological Unit Coordinates (4lyl.pdb9.gz) 110 Kb
  • CSU: Contacts of Structural Units for 4LYL
  • Structure Factors (1846 Kb)
  • Retrieve 4LYL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LYL from S2C, [Save to disk]
  • Re-refined 4lyl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4LYL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4LYL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4LYL, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4lyl_H] [4lyl_M] [4lyl_J] [4lyl] [4lyl_O] [4lyl_C] [4lyl_F] [4lyl_K] [4lyl_L] [4lyl_E] [4lyl_N] [4lyl_B] [4lyl_P] [4lyl_A] [4lyl_G] [4lyl_D] [4lyl_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4LYL: [UDG] [UreE_C ] by SMART
    • Other resources with information on 4LYL
  • Community annotation for 4LYL at PDBWiki (http://pdbwiki.org)

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