4LYN Crystal structure of cyclin-dependent kinase 2 (cdk2-wt) complex with (2s)-n-(5-(((5-tert-butyl-1,3-oxazol-2-yl)methyl)sulfanyl)-1,3-thiazol-2-yl)-2-phenylpropanamide date
authors Sack, J.S.
compound source
symmetry
R_factor
R_Free 0.2378
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand 1YG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of aminothiazole inhibitors of cyclin-dependent kinase 2: synthesis, X-ray crystallographic analysis, and biological activities., Kim KS, Kimball SD, Misra RN, Rawlins DB, Hunt JT, Xiao HY, Lu S, Qian L, Han WC, Shan W, Mitt T, Cai ZW, Poss MA, Zhu H, Sack JS, Tokarski JS, Chang CY, Pavletich N, Kamath A, Humphreys WG, Marathe P, Bursuker I, Kellar KA, Roongta U, Batorsky R, Mulheron JG, Bol D, Fairchild CR, Lee FY, Webster KR, J Med Chem. 2002 Aug 29;45(18):3905-27. PMID:12190313
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (4lyn.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 4LYN
  • CSU: Contacts of Structural Units for 4LYN
  • Structure Factors (293 Kb)
  • Retrieve 4LYN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LYN from S2C, [Save to disk]
  • Re-refined 4lyn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4LYN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4LYN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4LYN, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4lyn_A] [4lyn]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4LYN: [S_TKc ] by SMART
  • Other resources with information on 4LYN
  • Community annotation for 4LYN at PDBWiki (http://pdbwiki.org)

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