4LZ2 Signaling Protein date Jul 31, 2013
title Crystal Structure Of The Bromodomain Of Human Baz2a
authors C.Tallant, G.Nunez-Alonso, S.Picaud, P.Filippakopoulos, T.Krojer A.Bradley, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, Structural Genomics Consortium (Sgc)
compound source
Molecule: Bromodomain Adjacent To Zinc Finger Domain Protei
Chain: A
Fragment: Bromodomain (Unp Residues 1796-1899)
Synonym: Baz2a, Transcription Termination Factor I-Interact Protein 5, Ttf-I-Interacting Protein 5, Tip5, Hwalp3;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Baz2a, Kiaa0314, Tip5
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)-R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa
symmetry Space Group: P 31 2 1
R_factor 0.176 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.417 95.417 33.054 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.76 Å
ligand EDO, MG enzyme
Primary referenceMolecular basis of histone tail recognition by human TIP5 PHD finger and bromodomain of the chromatin remodeling complex NoRC., Tallant C, Valentini E, Fedorov O, Overvoorde L, Ferguson FM, Filippakopoulos P, Svergun DI, Knapp S, Ciulli A, Structure. 2015 Jan 6;23(1):80-92. doi: 10.1016/j.str.2014.10.017. Epub 2014 Dec , 18. PMID:25533489
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (4lz2.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 4LZ2
  • CSU: Contacts of Structural Units for 4LZ2
  • Structure Factors (230 Kb)
  • Retrieve 4LZ2 in mmCIF format [Save to disk]
  • Re-refined 4lz2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4LZ2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4LZ2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4LZ2, from MSDmotif at EBI
  • Fold representative 4lz2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4lz2] [4lz2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4LZ2: [BROMO ] by SMART
  • Other resources with information on 4LZ2
  • Community annotation for 4LZ2 at PDBWiki (http://pdbwiki.org)

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