4LZG Transferase Dna date Jul 31, 2013
title Binary Complex Of Human Dna Polymerase Mu With Dna
authors A.F.Moon, J.M.Pryor, D.A.Ramsden, T.A.Kunkel, K.Bebenek, L.C.Pede
compound source
Molecule: Dna-Directed Dnarna Polymerase Mu
Chain: A
Fragment: Polymerase Mu Loop2 Deletion Variant, Unp Residue
Synonym: Pol Mu, Terminal Transferase
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Polm, Polmu
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgexm

Molecule: Template Strand
Chain: T
Engineered: Yes

Synthetic: Yes
Other_details: Synethesized By Oligos Etc

Molecule: Upstream Primer Strand
Chain: P
Engineered: Yes

Synthetic: Yes
Other_details: Synthesized By Oligos Etc

Molecule: Downstream Primer Strand
Chain: D
Engineered: Yes

Synthetic: Yes
Other_details: Synthesized By Oligos Etc
symmetry Space Group: P 21 21 21
R_factor 0.174 R_Free 0.205
length a length b length c angle alpha angle beta angle gamma
60.003 68.514 110.307 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand CL, GOL, NA enzyme Transferase E.C. BRENDA

Primary referenceSustained active site rigidity during synthesis by human DNA polymerase mu., Moon AF, Pryor JM, Ramsden DA, Kunkel TA, Bebenek K, Pedersen LC, Nat Struct Mol Biol. 2014 Mar;21(3):253-60. doi: 10.1038/nsmb.2766. Epub 2014 Feb, 2. PMID:24487959
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (4lzg.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 4LZG
  • CSU: Contacts of Structural Units for 4LZG
  • Structure Factors (444 Kb)
  • Retrieve 4LZG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LZG from S2C, [Save to disk]
  • Re-refined 4lzg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4LZG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4LZG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4LZG, from MSDmotif at EBI
  • Fold representative 4lzg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4lzg_D] [4lzg_P] [4lzg_T] [4lzg_A] [4lzg]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4LZG: [POLXc ] by SMART
  • Other resources with information on 4LZG
  • Community annotation for 4LZG at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science