4M2P Crystal structure of a non-myristoylated C39D recoverin mutant with one calcium ion bound to EF-hand 3 date 2013-08-05
authors Kumar, R.Prem., Ranaghan, M.J., Oprian, D.D.
compound source
symmetry
R_factor
R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.45
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA Highly Conserved Cysteine of Neuronal Calcium-sensing Proteins Controls Cooperative Binding of Ca2+ to Recoverin., Ranaghan MJ, Kumar RP, Chakrabarti KS, Buosi V, Kern D, Oprian DD, J Biol Chem. 2013 Dec 13;288(50):36160-7. doi: 10.1074/jbc.M113.524355. Epub 2013, Nov 4. PMID:24189072
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (4m2p.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 4M2P
  • CSU: Contacts of Structural Units for 4M2P
  • Structure Factors (731 Kb)
  • Retrieve 4M2P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4M2P from S2C, [Save to disk]
  • Re-refined 4m2p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4M2P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4M2P
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4M2P, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4m2p] [4m2p_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4M2P: [EFh ] by SMART
  • Other resources with information on 4M2P
  • Community annotation for 4M2P at PDBWiki (http://pdbwiki.org)

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