4M38 Transferase Transferase Substrate date Aug 06, 2013
title Crystal Structure Of Trypanosoma Brucei Protein Arginine Methyltransferase 7 Complex With Adohcy And Histone H4 Pept
authors C.Wang, Y.Zhu, Y.Shi
compound source
Molecule: Protein Arginine N-Methyltransferase 7
Chain: A, B
Fragment: Unp Residues 36-378
Synonym: Tbprmt7
Ec: 2.1.1.-
Engineered: Yes
Organism_scientific: Trypanosoma Brucei Brucei
Organism_taxid: 999953
Strain: 9274 Gutat10.1
Gene: Prmt7, Tb927.7.5490
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid

Molecule: Histone H4
Chain: E, F
Fragment: Unp Residues 2-22
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: This Sequence Occurs Naturally In Humans
symmetry Space Group: P 1 21 1
R_factor 0.188 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.696 72.764 72.565 90.00 110.94 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand SAH enzyme Transferase E.C.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


F, E


Primary referenceStructural Determinants for the Strict Monomethylation Activity by Trypanosoma brucei Protein Arginine Methyltransferase 7., Wang C, Zhu Y, Caceres TB, Liu L, Peng J, Wang J, Chen J, Chen X, Zhang Z, Zuo X, Gong Q, Teng M, Hevel JM, Wu J, Shi Y, Structure. 2014 Apr 8. pii: S0969-2126(14)00075-6. doi:, 10.1016/j.str.2014.03.003. PMID:24726341
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (4m38.pdb1.gz) 106 Kb
  • LPC: Ligand-Protein Contacts for 4M38
  • CSU: Contacts of Structural Units for 4M38
  • Structure Factors (557 Kb)
  • Retrieve 4M38 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4M38 from S2C, [Save to disk]
  • Re-refined 4m38 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4M38 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4M38
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4M38, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4m38_B] [4m38_E] [4m38_F] [4m38_A] [4m38]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4M38
  • Community annotation for 4M38 at PDBWiki (http://pdbwiki.org)

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