4M3Z RB69 DNA polymerase ternary complex with dG/dT at position n-2 of primer/tempLate duplex date 2013-08-06
authors Xia, S., Konigsberg, W.H.
compound source
symmetry
R_factor
R_Free 0.20656
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.84
ligand ATP, CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • DNA-directed DNA polymerase ...
  • nuclease activity
  • exonuclease activity
  • 3'-5' exonuclease activity


  • Primary referenceMispairs with Watson-Crick Base-pair Geometry Observed in Ternary Complexes of an RB69 DNA Polymerase Variant., Xia S, Konigsberg WH, Protein Sci. 2014 Jan 24. doi: 10.1002/pro.2434. PMID:24458997
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (345 Kb) [Save to disk]
  • Biological Unit Coordinates (4m3z.pdb1.gz) 338 Kb
  • LPC: Ligand-Protein Contacts for 4M3Z
  • CSU: Contacts of Structural Units for 4M3Z
  • Structure Factors (1924 Kb)
  • Retrieve 4M3Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4M3Z from S2C, [Save to disk]
  • Re-refined 4m3z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4M3Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4M3Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4M3Z, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4m3z] [4m3z_T] [4m3z_A] [4m3z_P]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4M3Z: [POLBc ] by SMART
  • Other resources with information on 4M3Z
  • Community annotation for 4M3Z at PDBWiki (http://pdbwiki.org)

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