4M4E TRAF domain of human TRAF4 date 2013-08-07
authors Niu, F., Ru, H., Ding, W., Ouyang, S., Liu, Z.J.
compound source
symmetry
R_factor
R_Free 0.2773
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructural biology study of human TNF receptor associated factor 4 TRAF domain., Niu F, Ru H, Ding W, Ouyang S, Liu ZJ, Protein Cell. 2013 Aug 27. PMID:23982741
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (4m4e.pdb1.gz) 83 Kb
  • CSU: Contacts of Structural Units for 4M4E
  • Structure Factors (261 Kb)
  • Retrieve 4M4E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4M4E from S2C, [Save to disk]
  • Re-refined 4m4e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4M4E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4M4E
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4M4E, from MSDmotif at EBI
  • Fold representative 4m4e from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4m4e_A] [4m4e] [4m4e_C] [4m4e_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4M4E: [MATH ] by SMART
  • Other resources with information on 4M4E
  • Community annotation for 4M4E at PDBWiki (http://pdbwiki.org)

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