4M52 Structure of Mtb Lpd bound to SL827 date 2013-08-07
authors Lima, C.D.
compound source
symmetry
R_factor
R_Free 0.2218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand FAD, M52 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • antioxidant activity


    • Primary referenceLipoamide Channel-Binding Sulfonamides Selectively Inhibit Mycobacterial Lipoamide Dehydrogenase., Bryk R, Arango N, Maksymiuk C, Balakrishnan A, Wu YT, Wong CH, Masquelin T, Hipskind P, Lima CD, Nathan C, Biochemistry. 2013 Nov 26. PMID:24251446
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (301 Kb) [Save to disk]
  • Biological Unit Coordinates (4m52.pdb1.gz) 150 Kb
  • Biological Unit Coordinates (4m52.pdb2.gz) 150 Kb
  • LPC: Ligand-Protein Contacts for 4M52
  • CSU: Contacts of Structural Units for 4M52
  • Structure Factors (1096 Kb)
  • Retrieve 4M52 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4M52 from S2C, [Save to disk]
  • Re-refined 4m52 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4M52 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4M52
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4M52, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4m52_A] [4m52] [4m52_D] [4m52_B] [4m52_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4M52
  • Community annotation for 4M52 at PDBWiki (http://pdbwiki.org)

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