4M60 Crystal structure of macrolide glycosyltransferases OleD date
authors Olmos, J.L., III, E.Martinez., Wang, F., Helmich, K.E., Singh, S., Xu, W., Bingman, C.A., Thorson, J.S., Phillips, G.N., NatPro, Enzyme.Discovery.for.Natural.Product.Biosynthesis.
compound source
symmetry
R_factor
R_Free 0.2080
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.77
ligand EPE, MSE, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (194 Kb) [Save to disk]
  • Biological Unit Coordinates (4m60.pdb1.gz) 189 Kb
  • LPC: Ligand-Protein Contacts for 4M60
  • CSU: Contacts of Structural Units for 4M60
  • Structure Factors (422 Kb)
  • Retrieve 4M60 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4M60 from S2C, [Save to disk]
  • Re-refined 4m60 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4M60 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4M60
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4M60, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4m60_A] [4m60]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4M60
  • Community annotation for 4M60 at PDBWiki (http://pdbwiki.org)

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