4M7F Crystal structure of tetrameric fibrinogen-like recognition domain of FIBCD1 with bound ManNAc date
authors Shrive, A.K., Greenhough, T.J., Holmskov, U.
compound source
symmetry
R_factor
R_Free 0.2139
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand BM3, CA, NAG, SO4 enzyme
Primary referenceCrystal structure of the tetrameric fibrinogen-like recognition domain of Fibrinogen C domain containing 1 (FIBCD1)., Shrive AK, Moeller JB, Burns I, Paterson JM, Shaw AJ, Schlosser A, Sorensen GL, Greenhough TJ, Holmskov U, J Biol Chem. 2013 Dec 19. PMID:24293368
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (4m7f.pdb1.gz) 154 Kb
  • Biological Unit Coordinates (4m7f.pdb2.gz) 152 Kb
  • LPC: Ligand-Protein Contacts for 4M7F
  • CSU: Contacts of Structural Units for 4M7F
  • Structure Factors (2078 Kb)
  • Retrieve 4M7F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4M7F from S2C, [Save to disk]
  • Re-refined 4m7f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4M7F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4M7F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4M7F, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4m7f_B] [4m7f_A] [4m7f]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4M7F: [FBG ] by SMART
    • Other resources with information on 4M7F
  • Community annotation for 4M7F at PDBWiki (http://pdbwiki.org)

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