4M7P Ensemble refinement of protein crystal structure of macrolide glycosyltransferases OleD date 2013-08-12
authors Wang, F., Helmich, K.E., Xu, W., Singh, S., Olmos, J.L., iii, E.Martinez., Bingman, C.A., Thorson, J.S., Phillips, G.N., NatPro, Enzyme.Discovery.for.Natural.Product.Biosynthesis.
compound source
symmetry
R_factor
R_Free 0.1884
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.77
ligand MSE, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (4807 Kb) [Save to disk]
  • Biological Unit Coordinates (4m7p.pdb1.gz) 242 Kb
  • LPC: Ligand-Protein Contacts for 4M7P
  • CSU: Contacts of Structural Units for 4M7P
  • Structure Factors (422 Kb)
  • Retrieve 4M7P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4M7P from S2C, [Save to disk]
    • View 4M7P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4M7P
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4M7P, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4m7p_A] [4m7p]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4M7P
  • Community annotation for 4M7P at PDBWiki (http://pdbwiki.org)

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