4M7P Transferase date Aug 12, 2013
title Ensemble Refinement Of Protein Crystal Structure Of Macrolid Glycosyltransferases Oled
authors F.Wang, K.E.Helmich, W.Xu, S.Singh, J.L.Olmos Jr., E.Martinez Iii C.A.Bingman, J.S.Thorson, G.N.Phillips Jr., Enzyme Discovery F Natural Product Biosynthesis (Natpro)
compound source
Molecule: Oleandomycin Glycosyltransferase
Chain: A
Engineered: Yes
Organism_scientific: Streptomyces Antibioticus
Organism_taxid: 1890
Gene: Oled
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: H 3
R_factor 0.150 R_Free 0.188
crystal
cell
length a length b length c angle alpha angle beta angle gamma
124.134 124.134 67.636 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.77 Å
ligand MSE, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (4807 Kb) [Save to disk]
  • Biological Unit Coordinates (4m7p.pdb1.gz) 242 Kb
  • LPC: Ligand-Protein Contacts for 4M7P
  • CSU: Contacts of Structural Units for 4M7P
  • Structure Factors (422 Kb)
  • Retrieve 4M7P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4M7P from S2C, [Save to disk]
  • View 4M7P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4M7P
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4M7P, from MSDmotif at EBI
  • Fold representative 4m7p from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4m7p_A] [4m7p]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4M7P
  • Community annotation for 4M7P at PDBWiki (http://pdbwiki.org)

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