4M8Q Ontogeny of recognition specificity and functionality for the anti-HIV neutralizing antibody 4E10 date
authors Finton, K.A.K.
compound source
symmetry
R_factor
R_Free 0.30168
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.89
Gene
Ontology
ChainFunctionProcessComponent
L, B


Primary referenceOntogeny of Recognition Specificity and Functionality for the Broadly Neutralizing Anti-HIV Antibody 4E10., Finton KA, Friend D, Jaffe J, Gewe M, Holmes MA, Larman HB, Stuart A, Larimore K, Greenberg PD, Elledge SJ, Stamatatos L, Strong RK, PLoS Pathog. 2014 Sep 25;10(9):e1004403. doi: 10.1371/journal.ppat.1004403., eCollection 2014 Sep. PMID:25254371
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (238 Kb) [Save to disk]
  • Biological Unit Coordinates (4m8q.pdb1.gz) 117 Kb
  • Biological Unit Coordinates (4m8q.pdb2.gz) 117 Kb
  • Biological Unit Coordinates (4m8q.pdb3.gz) 232 Kb
  • CSU: Contacts of Structural Units for 4M8Q
  • Structure Factors (348 Kb)
  • Retrieve 4M8Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4M8Q from S2C, [Save to disk]
  • Re-refined 4m8q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4M8Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4M8Q
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4M8Q, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4m8q_S] [4m8q_H] [4m8q_A] [4m8q_B] [4m8q_C] [4m8q] [4m8q_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4M8Q: [IGv ] by SMART
    • Other resources with information on 4M8Q
  • Community annotation for 4M8Q at PDBWiki (http://pdbwiki.org)

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