4M94	Transferase Dna	date	Aug 14, 2013
title	D(Atccgttataacggat) Complexed With Moloney Murine Leukemia V Reverse Transcriptase Catalytic Fragment
authors	I.Singh
compound		source
Molecule: Gag-Pol Polyprotein Chain: A Fragment: Unp Residues 683-937 Synonym: Pr180gag-Pol, Matrix Protein P15, Ma, Rna-Binding Phosphoprotein P12, Pp12, Capsid Protein P30, Ca, Nucleocap Protein P10, Nc-Pol, Protease P14, Pr, Reverse Transcriptaseribonuclease H P80, Rt, Integrase P46, In; Ec: 3.4.23.-, 2.7.7.49, 2.7.7.7, 3.1.26.4 Engineered: Yes		Organism_scientific: Moloney Murine Leukemia Virus Isolate Organism_common: Momlv Organism_taxid: 928306 Gene: Gag-Pol, Reverse Transcriptase Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
Molecule: 5' D(Atccgtta) 3' Chain: B Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 Other_details: Polydeoxyribonucleotide
Molecule: 5' D(Taacggat) 3' Chain: G Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 Other_details: Polydeoxyribonucleotide
symmetry	Space Group: P 21 21 2	R_factor 0.201 R_Free 0.239
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.957 145.722 46.876 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.14 Å
ligand	EDO, QBT	enzyme	Hydrolase E.C.3.4.23 BRENDA
Primary reference	The structure of an authentic spore photoproduct lesion in DNA suggests a basis for recognition., Singh I, Lian Y, Li L, Georgiadis MM, Acta Crystallogr D Biol Crystallogr. 2014 Mar;70(Pt 3):752-9. doi:, 10.1107/S1399004713032987. Epub 2014 Feb 15. PMID:24598744

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (4m94.pdb1.gz) 50 Kb LPC: Ligand-Protein Contacts for 4M94 CSU: Contacts of Structural Units for 4M94 Structure Factors (285 Kb) Retrieve 4M94 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4M94 from S2C, [Save to disk] Re-refined 4m94 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4M94 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4M94

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4M94, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4m94] [4m94_B] [4m94_G] [4m94_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4M94

Community annotation for 4M94 at PDBWiki (http://pdbwiki.org)

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