4MCA Oxidoreductase date Aug 21, 2013
title Crystal Structure Of Glycerol Dehydrogenase From Serratia To
authors P.M.Musille, E.A.Ortlund
compound source
Molecule: Glycerol Dehydrogenase
Chain: A, B
Ec: 1.1.1.6
Organism_scientific: Serratia Plymuthica A30
Organism_taxid: 1206776
symmetry Space Group: I 4 2 2
R_factor 0.177 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
117.507 117.507 259.863 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand GOL, NA, ZN enzyme Oxidoreductase E.C.1.1.1.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (4mca.pdb1.gz) 924 Kb
  • Biological Unit Coordinates (4mca.pdb2.gz) 463 Kb
  • Biological Unit Coordinates (4mca.pdb3.gz) 118 Kb
  • LPC: Ligand-Protein Contacts for 4MCA
  • CSU: Contacts of Structural Units for 4MCA
  • Structure Factors (1096 Kb)
  • Retrieve 4MCA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4MCA from S2C, [Save to disk]
  • Re-refined 4mca structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4MCA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4MCA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4MCA, from MSDmotif at EBI
  • Fold representative 4mca from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4mca_B] [4mca] [4mca_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4MCA
  • Community annotation for 4MCA at PDBWiki (http://pdbwiki.org)

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