4MCZ Immune Receptor date 2013-08-22
authors Scally, S.W., Rossjohn, J.
compound source
symmetry
R_factor
R_Free 0.2309
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.41
ligand CIR, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceA molecular basis for the association of the HLA-DRB1 locus, citrullination, and rheumatoid arthritis., Scally SW, Petersen J, Law SC, Dudek NL, Nel HJ, Loh KL, Wijeyewickrema LC, Eckle SB, van Heemst J, Pike RN, McCluskey J, Toes RE, La Gruta NL, Purcell AW, Reid HH, Thomas R, Rossjohn J, J Exp Med. 2013 Nov 18;210(12):2569-82. doi: 10.1084/jem.20131241. Epub 2013 Nov , 4. PMID:24190431
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (4mcz.pdb1.gz) 133 Kb
  • LPC: Ligand-Protein Contacts for 4MCZ
  • CSU: Contacts of Structural Units for 4MCZ
  • Structure Factors (1041 Kb)
  • Retrieve 4MCZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4MCZ from S2C, [Save to disk]
  • Re-refined 4mcz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4MCZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4MCZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4MCZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4mcz_A] [4mcz_C] [4mcz] [4mcz_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4MCZ: [IGc1] [MHC_II_alpha] [MHC_II_beta ] by SMART
  • Other resources with information on 4MCZ
  • Community annotation for 4MCZ at PDBWiki (http://pdbwiki.org)

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