4MI0 Transferase date Aug 30, 2013
title Human Enhancer Of Zeste (Drosophila) Homolog 2(Ezh2)
authors A.Dong, H.Zeng, H.He, A.Wernimont, C.Bountra, C.H.Arrowsmith, A.M. P.J.Brown, H.Wu, Structural Genomics Consortium (Sgc)
compound source
Molecule: Histone-Lysine N-Methyltransferase Ezh2
Chain: A
Fragment: Unp Residues 520-746
Synonym: Enx-1, Enhancer Of Zeste Homolog 2, Lysine N- Methyltransferase 6;
Ec: 2.1.1.43
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ezh2, Kmt6
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_vector: Pfboh-Lic-C-His
symmetry Space Group: P 21 21 21
R_factor 0.198 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.010 57.796 74.542 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand UNX, ZN enzyme Transferase E.C.2.1.1.43 BRENDA
Primary referenceStructure of the catalytic domain of EZH2 reveals conformational plasticity in cofactor and substrate binding sites and explains oncogenic mutations., Wu H, Zeng H, Dong A, Li F, He H, Senisterra G, Seitova A, Duan S, Brown PJ, Vedadi M, Arrowsmith CH, Schapira M, PLoS One. 2013 Dec 19;8(12):e83737. doi: 10.1371/journal.pone.0083737., eCollection 2013. PMID:24367611
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (4mi0.pdb1.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 4MI0
  • CSU: Contacts of Structural Units for 4MI0
  • Structure Factors (596 Kb)
  • Retrieve 4MI0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4MI0 from S2C, [Save to disk]
  • Re-refined 4mi0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4MI0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4MI0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4MI0, from MSDmotif at EBI
  • Fold representative 4mi0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4mi0] [4mi0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4MI0: [CXC] [SET ] by SMART
  • Other resources with information on 4MI0
  • Community annotation for 4MI0 at PDBWiki (http://pdbwiki.org)

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