4MJ6 Immune System Peptide date Sep 03, 2013
title Crystal Structure Of Hla-A1101 In Complex With H7-22, An In A(H7n9) Virus Epitope
authors J.Liu, S.Tan, M.Zhao, J.Qi, G.F.Gao
compound source
Molecule: Hla Class I Histocompatibility Antigen, A-11 Alph
Chain: A
Synonym: Mhc Class I Antigen A11
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hla-A, Hlaa
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Beta-2-Microglobulin
Chain: B
Synonym: Beta-2-Microglobulin Form Pi 5.3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Cdabp0092, Hdcma22p
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Nucleoprotein
Chain: C
Fragment: Unp Residues 188-198
Engineered: Yes
Synthetic: Yes
Organism_scientific: Influenza A Virus
Organism_taxid: 1336602
Other_details: The Peptide Was Chemically Synthesized.
symmetry Space Group: P 21 21 21
R_factor 0.187 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.993 65.052 109.739 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.57 Å
Gene
Ontology
ChainFunctionProcessComponent
B
  • cellular response to iron io...

    • Primary referenceCross-immunity Against Avian Influenza A(H7N9) Virus in the Healthy Population Is Affected by Antigenicity-Dependent Substitutions., Liu WJ, Tan S, Zhao M, Quan C, Bi Y, Wu Y, Zhang S, Zhang H, Xiao H, Qi J, Yan J, Liu W, Yu H, Shu Y, Wu G, Gao GF, J Infect Dis. 2016 Dec 15;214(12):1937-1946. Epub 2016 Oct 12. PMID:27738054
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk]
  • Biological Unit Coordinates (4mj6.pdb1.gz) 132 Kb
  • CSU: Contacts of Structural Units for 4MJ6
  • Structure Factors (214 Kb)
  • Retrieve 4MJ6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4MJ6 from S2C, [Save to disk]
  • Re-refined 4mj6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4MJ6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4MJ6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4MJ6, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4mj6_B] [4mj6_A] [4mj6] [4mj6_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4MJ6: [IGc1 ] by SMART
    • Other resources with information on 4MJ6
  • Community annotation for 4MJ6 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science