4MMM Human Pdrx5 complex with a ligand BP7 date
authors Guichou, J.F.
compound source
symmetry
R_factor
R_Free 0.19155
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.47
ligand BP7 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, G, E


Primary referenceComparing Binding Modes of Analogous Fragments Using NMR in Fragment-Based Drug Design: Application to PRDX5., Aguirre C, Brink TT, Guichou JF, Cala O, Krimm I, PLoS One. 2014 Jul 15;9(7):e102300. doi: 10.1371/journal.pone.0102300., eCollection 2014. PMID:25025339
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • Biological Unit Coordinates (4mmm.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (4mmm.pdb2.gz) 31 Kb
  • Biological Unit Coordinates (4mmm.pdb3.gz) 30 Kb
  • Biological Unit Coordinates (4mmm.pdb4.gz) 29 Kb
  • Biological Unit Coordinates (4mmm.pdb5.gz) 59 Kb
  • Biological Unit Coordinates (4mmm.pdb6.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 4MMM
  • CSU: Contacts of Structural Units for 4MMM
  • Structure Factors (6858 Kb)
  • Retrieve 4MMM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4MMM from S2C, [Save to disk]
  • Re-refined 4mmm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4MMM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4MMM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4MMM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4mmm_E] [4mmm_G] [4mmm_A] [4mmm] [4mmm_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4MMM
  • Community annotation for 4MMM at PDBWiki (http://pdbwiki.org)

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