4MV2 Crystal structure of plu4264 protein from Photorhabdus luminescens date 2013-09-23
authors Michalska, K., Li, H., Jedrzejczak, R., Babnigg, G., Bingman, C.A., Yennamalli, R., Weerth, S., Thomas, M.G., Phillips, G.N., Joachimiak, A., MCSG, Midwest.Center.for.Structural.Genomics., NatPro, Enzyme.Discovery.for.Natural.Product.Biosynthesis.
compound source
symmetry
R_factor
R_Free 0.1589
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.35
ligand MSE, NA, NI enzyme
note 4MV2 supersedes 4I4A
Primary referenceStructure of a cupin protein Plu4264 from Photorhabdus luminescens subsp. laumondii TTO1 at 1.35 A resolution., Weerth RS, Michalska K, Bingman CA, Yennamalli RM, Li H, Jedrzejczak R, Wang F, Babnigg G, Joachimiak A, Thomas MG, Phillips GN, Proteins. 2014 Oct 30. doi: 10.1002/prot.24705. PMID:25354690
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (4mv2.pdb1.gz) 109 Kb
  • LPC: Ligand-Protein Contacts for 4MV2
  • CSU: Contacts of Structural Units for 4MV2
  • Structure Factors (3865 Kb)
  • Retrieve 4MV2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4MV2 from S2C, [Save to disk]
  • Re-refined 4mv2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4MV2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4MV2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4MV2, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4mv2_B] [4mv2_A] [4mv2]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4MV2
  • Community annotation for 4MV2 at PDBWiki (http://pdbwiki.org)

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