4MWO Crystal structure of human mitochondrial 5'(3')-deoxyribonucleotidase in complex with the inhibitor CPB-T date
authors Pachl, P., Rezacova, P., Brynda, J.
compound source
symmetry
R_factor
R_Free 0.1912
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.67
ligand 2E2, GOL, K, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceConformationally constrained nucleoside phosphonic acids - potent inhibitors of human mitochondrial and cytosolic 5'(3')-nucleotidases., Simak O, Pachl P, Fabry M, Budesinsky M, Jandusik T, Hnizda A, Sklenickova R, Petrova M, Veverka V, Rezacova P, Brynda J, Rosenberg I, Org Biomol Chem. 2014 Sep 1. PMID:25178098
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (4mwo.pdb1.gz) 144 Kb
  • LPC: Ligand-Protein Contacts for 4MWO
  • CSU: Contacts of Structural Units for 4MWO
  • Structure Factors (491 Kb)
  • Retrieve 4MWO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4MWO from S2C, [Save to disk]
  • Re-refined 4mwo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4MWO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4MWO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4MWO, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4mwo_A] [4mwo]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4MWO
  • Community annotation for 4MWO at PDBWiki (http://pdbwiki.org)

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