4MY2 Crystal Structure of Norrin in fusion with Maltose Binding Protein date
authors Ke, J., Jurecky, C., Chen, C., Gu, X., Parker, N., Williams, B.O., Melcher, K., Xu, H.E.
compound source
symmetry
R_factor
R_Free 0.23740
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand GLC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and function of Norrin in assembly and activation of a Frizzled 4-Lrp5/6 complex., Ke J, Harikumar KG, Erice C, Chen C, Gu X, Wang L, Parker N, Cheng Z, Xu W, Williams BO, Melcher K, Miller LJ, Xu HE, Genes Dev. 2013 Nov 1;27(21):2305-19. doi: 10.1101/gad.228544.113. PMID:24186977
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (4my2.pdb1.gz) 155 Kb
  • LPC: Ligand-Protein Contacts for 4MY2
  • CSU: Contacts of Structural Units for 4MY2
  • Structure Factors (278 Kb)
  • Retrieve 4MY2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4MY2 from S2C, [Save to disk]
  • Re-refined 4my2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4MY2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4MY2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4MY2, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4my2_A] [4my2]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4MY2: [CT ] by SMART
    • Other resources with information on 4MY2
  • Community annotation for 4MY2 at PDBWiki (http://pdbwiki.org)

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