4MYM Crystal structure of a glyoxalase/ bleomycin resistance protein/ dioxygenase from Nocardioides date 2013-09-27
authors Eswaramoorthy, S., Chamala, S., Evans, B., Foti, F., Gizzi, A., Hillerich, B., Kar, A., Lafleur, J., Seidel, R., Villigas, G., Zencheck, W., Obaidi, N.AL., Almo, S.C., Swaminathan, S., NYSGRC, New.York.Structural.Genomics.Research.Consortium.
compound source
symmetry
R_factor
R_Free 0.21722
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand BTB, MSE enzyme
Gene NOCA
Gene
Ontology
ChainFunctionProcessComponent
A
  • dioxygenase activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (4mym.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 4MYM
  • CSU: Contacts of Structural Units for 4MYM
  • Structure Factors (234 Kb)
  • Retrieve 4MYM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4MYM from S2C, [Save to disk]
  • Re-refined 4mym structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4MYM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4MYM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4MYM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4mym] [4mym_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4MYM
  • Community annotation for 4MYM at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science