4N3C Crystal Structure of human O-GlcNAc Transferase bound to a peptide from HCF-1 pro-repeat2(1-26) and UDP-GlcNAc date 2013-10-06
authors Lazarus, M.B., Herr, W., Walker, S.
compound source
symmetry
R_factor
R_Free 0.2261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.55
ligand UD1 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHCF-1 is cleaved in the active site of O-GlcNAc transferase., Lazarus MB, Jiang J, Kapuria V, Bhuiyan T, Janetzko J, Zandberg WF, Vocadlo DJ, Herr W, Walker S, Science. 2013 Dec 6;342(6163):1235-9. doi: 10.1126/science.1243990. PMID:24311690
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (242 Kb) [Save to disk]
  • Biological Unit Coordinates (4n3c.pdb1.gz) 235 Kb
  • LPC: Ligand-Protein Contacts for 4N3C
  • CSU: Contacts of Structural Units for 4N3C
  • Structure Factors (451 Kb)
  • Retrieve 4N3C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4N3C from S2C, [Save to disk]
  • Re-refined 4n3c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4N3C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4N3C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4N3C, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4n3c_A] [4n3c] [4n3c_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4N3C: [TPR ] by SMART
  • Other resources with information on 4N3C
  • Community annotation for 4N3C at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science