4N48 Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 Protein in complex with capped RNA fragment date
authors Smietanski, M., Werener, M., Purta, E., Kaminska, K.H., Stepinski, J., Darzynkiewicz, E., Nowotny, M., Bujnicki, J.M.
compound source
symmetry
R_factor
R_Free 0.2415
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.70
ligand MGT, SAM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural analysis of human 2'-O-ribose methyltransferases involved in mRNA cap structure formation., Smietanski M, Werner M, Purta E, Kaminska KH, Stepinski J, Darzynkiewicz E, Nowotny M, Bujnicki JM, Nat Commun. 2014 Jan 9;5:3004. doi: 10.1038/ncomms4004. PMID:24402442
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (142 Kb) [Save to disk]
  • Biological Unit Coordinates (4n48.pdb1.gz) 70 Kb
  • Biological Unit Coordinates (4n48.pdb2.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 4N48
  • CSU: Contacts of Structural Units for 4N48
  • Structure Factors (255 Kb)
  • Retrieve 4N48 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4N48 from S2C, [Save to disk]
  • Re-refined 4n48 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4N48 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4N48
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4N48, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4n48_G] [4n48_B] [4n48_A] [4n48_D] [4n48]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4N48
  • Community annotation for 4N48 at PDBWiki (http://pdbwiki.org)

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