4N5G Crystal Structure of RXRa LBD complexed with a synthetic modulator K8012 date
authors Aleshin, A.E., Su, Y., Zhang, X., Liddington, R.C.
compound source
symmetry
R_factor
R_Free 0.2468
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.11
ligand K09 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceSulindac-Derived RXRalpha Modulators Inhibit Cancer Cell Growth by Binding to a Novel Site., Chen L, Wang ZG, Aleshin AE, Chen F, Chen J, Jiang F, Alitongbieke G, Zeng Z, Ma Y, Huang M, Zhou H, Cadwell G, Zheng JF, Huang PQ, Liddington RC, Zhang XK, Su Y, Chem Biol. 2014 Apr 2. pii: S1074-5521(14)00077-5. doi:, 10.1016/j.chembiol.2014.02.017. PMID:24704507
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (286 Kb) [Save to disk]
  • Biological Unit Coordinates (4n5g.pdb1.gz) 278 Kb
  • LPC: Ligand-Protein Contacts for 4N5G
  • CSU: Contacts of Structural Units for 4N5G
  • Structure Factors (800 Kb)
  • Retrieve 4N5G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4N5G from S2C, [Save to disk]
  • Re-refined 4n5g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4N5G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4N5G
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4N5G, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4n5g_C] [4n5g_B] [4n5g_A] [4n5g] [4n5g_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4N5G: [HOLI ] by SMART
    • Other resources with information on 4N5G
  • Community annotation for 4N5G at PDBWiki (http://pdbwiki.org)

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