4N7E	Signaling Protein	date	Oct 15, 2013
title	Crystal Structure Of The Vps10p Domain Of Human Sortilinnts Complex With Af38469
authors	J.L.Andersen, D.Strandbygaard, S.Thirup
compound		source
Molecule: Sortilin Chain: A Fragment: Unp Residues 78-756 Synonym: 100 Kda Nt Receptor, Glycoprotein 95, Gp95, Neurot Receptor 3, Nt3, Ntr3; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sort1 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell: Hek 293f Cell Expression_system_vector_type: Plasmid Expression_system_plasmid: Pcep-Pu
symmetry	Space Group: C 1 2 1	R_factor 0.201 R_Free 0.242
crystal cell	length a length b length c angle alpha angle beta angle gamma 161.948 77.402 111.176 90.00 127.06 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	2JQ, BMA, NAG, PGE	enzyme
Primary reference	The identification of AF38469: An orally bioavailable inhibitor of the VPS10P family sorting receptor Sortilin., Schroder TJ, Christensen S, Lindberg S, Langgard M, David L, Maltas PJ, Eskildsen J, Jacobsen J, Tagmose L, Simonsen KB, Biilmann Ronn LC, de Jong IE, Malik IJ, Karlsson JJ, Bundgaard C, Egebjerg J, Stavenhagen JB, Strandbygard D, Thirup S, Andersen JL, Uppalanchi S, Pervaram S, Kasturi SP, Eradi P, Sakumudi DR, Watson SP, Bioorg Med Chem Lett. 2014 Jan 1;24(1):177-80. doi: 10.1016/j.bmcl.2013.11.046., Epub 2013 Nov 27. PMID:24355129

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (232 Kb) [Save to disk] Biological Unit Coordinates (4n7e.pdb1.gz) 226 Kb LPC: Ligand-Protein Contacts for 4N7E CSU: Contacts of Structural Units for 4N7E Structure Factors (544 Kb) Retrieve 4N7E in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4N7E from S2C, [Save to disk] Re-refined 4n7e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4N7E in 3D

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Visual 3D analysis of 4N7E

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 4N7E, from MSDmotif at EBI Fold representative 4n7e from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4n7e_A] [4n7e] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4N7E: [VPS10 ] by SMART

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