4NAW Crystal Structure of Human ATG12~ATG5-ATG16N in complex with a fragment of ATG3 date
authors Metlagel, Z., Otomo, C., Takaesu, G., Otomo, T.
compound source
symmetry
R_factor
R_Free 0.2153
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.19
ligand NA, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, M, I, E


F, J, N, B


Primary referenceStructural basis of ATG3 recognition by the autophagic ubiquitin-like protein ATG12., Metlagel Z, Otomo C, Takaesu G, Otomo T, Proc Natl Acad Sci U S A. 2013 Nov 19;110(47):18844-9. doi:, 10.1073/pnas.1314755110. Epub 2013 Nov 4. PMID:24191030
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (856 Kb) [Save to disk]
  • Biological Unit Coordinates (4naw.pdb1.gz) 214 Kb
  • Biological Unit Coordinates (4naw.pdb2.gz) 214 Kb
  • Biological Unit Coordinates (4naw.pdb3.gz) 213 Kb
  • Biological Unit Coordinates (4naw.pdb4.gz) 213 Kb
  • LPC: Ligand-Protein Contacts for 4NAW
  • CSU: Contacts of Structural Units for 4NAW
  • Structure Factors (513 Kb)
  • Retrieve 4NAW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NAW from S2C, [Save to disk]
  • Re-refined 4naw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NAW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4NAW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NAW, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4naw_C] [4naw_F] [4naw_A] [4naw_B] [4naw_O] [4naw_N] [4naw_K] [4naw_G] [4naw_I] [4naw_E] [4naw_J] [4naw] [4naw_P] [4naw_L] [4naw_H] [4naw_D] [4naw_M]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4NAW
  • Community annotation for 4NAW at PDBWiki (http://pdbwiki.org)

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