4NB3 Crystal structure of RPA70N in complex with a 3,4 dichlorophenylalanine ATRIP derived peptide date 2013-10-22
authors Feldkamp, M.D., Frank, A.O., Vangamudi, B., Souza-Fagundes, E.M., Luzwik, J.W., Cortez, D., Olejniczak, O.T., Waterson, A.G., Rossanese, O.W., Fesik, S.W., Chazin, W.J.
compound source
symmetry
R_factor
R_Free 0.1747
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.35
ligand 2N2, ZCL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDiscovery of a Potent Stapled Helix Peptide That Binds to the 70N Domain of Replication Protein A., Frank AO, Vangamudi B, Feldkamp MD, Souza-Fagundes EM, Luzwick JW, Cortez D, Olejniczak ET, Waterson AG, Rossanese OW, Chazin WJ, Fesik SW, J Med Chem. 2014 Feb 19. PMID:24491171
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (4nb3.pdb1.gz) 54 Kb
  • Biological Unit Coordinates (4nb3.pdb2.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 4NB3
  • CSU: Contacts of Structural Units for 4NB3
  • Structure Factors (1382 Kb)
  • Retrieve 4NB3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NB3 from S2C, [Save to disk]
  • Re-refined 4nb3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NB3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4NB3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NB3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nb3_C] [4nb3] [4nb3_D] [4nb3_B] [4nb3_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4NB3
  • Community annotation for 4NB3 at PDBWiki (http://pdbwiki.org)

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