4NB6 Crystal structure of the ligand binding domain of RORC with T0901317 date 2013-10-22
authors Hymowitz, S.G., Leon, G.Boenig-de.
compound source
symmetry
R_factor
R_Free 0.27023
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.85
ligand 444 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure-based design of substituted hexafluoroisopropanol-arylsulfonamides as modulators of RORc., Fauber BP, de Leon Boenig G, Burton B, Eidenschenk C, Everett C, Gobbi A, Hymowitz SG, Johnson AR, Liimatta M, Lockey P, Norman M, Ouyang W, Rene O, Wong H, Bioorg Med Chem Lett. 2013 Dec 15;23(24):6604-9. doi: 10.1016/j.bmcl.2013.10.054., Epub 2013 Nov 4. PMID:24239186
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk]
  • Biological Unit Coordinates (4nb6.pdb1.gz) 79 Kb
  • Biological Unit Coordinates (4nb6.pdb2.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 4NB6
  • CSU: Contacts of Structural Units for 4NB6
  • Structure Factors (315 Kb)
  • Retrieve 4NB6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NB6 from S2C, [Save to disk]
  • Re-refined 4nb6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NB6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4NB6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NB6, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nb6_B] [4nb6_A] [4nb6]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4NB6: [HOLI ] by SMART
    • Other resources with information on 4NB6
  • Community annotation for 4NB6 at PDBWiki (http://pdbwiki.org)

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