4NCO Crystal Structure of the BG505 SOSIP gp140 HIV-1 Env trimer in Complex with the Broadly Neutralizing Fab PGT122 date 2013-10-24
authors Julien, J.P., Stanfield, R.L., Lyumkis, D., Ward, A.B., Wilson, I.A.
compound source
symmetry
R_factor
R_Free 0.3893
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 4.70
ligand BMA, MAN, NAG enzyme
note 4NCO (Molecule of the Month:pdb170)
Gene
Ontology
ChainFunctionProcessComponent
A, I, E


Primary referenceCrystal Structure of a Soluble Cleaved HIV-1 Envelope Trimer., Julien JP, Cupo A, Sok D, Stanfield RL, Lyumkis D, Deller MC, Klasse PJ, Burton DR, Sanders RW, Moore JP, Ward AB, Wilson IA, Science. 2013 Oct 31. PMID:24179159
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (908 Kb) [Save to disk]
  • Biological Unit Coordinates (4nco.pdb1.gz) 884 Kb
  • LPC: Ligand-Protein Contacts for 4NCO
  • CSU: Contacts of Structural Units for 4NCO
  • Structure Factors (763 Kb)
  • Retrieve 4NCO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NCO from S2C, [Save to disk]
  • Re-refined 4nco structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4NCO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4NCO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NCO, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nco_K] [4nco_A] [4nco_B] [4nco_I] [4nco_G] [4nco_C] [4nco_H] [4nco_D] [4nco] [4nco_L] [4nco_E] [4nco_F] [4nco_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4NCO: [IG_like] [IGv ] by SMART
  • Other resources with information on 4NCO
  • Community annotation for 4NCO at PDBWiki (http://pdbwiki.org)

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