4NDM date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Primary referenceCrystal Structure of Vdelta1 T Cell Receptor in Complex with CD1d-Sulfatide Shows MHC-like Recognition of a Self-Lipid by Human gammadelta T Cells., Luoma AM, Castro CD, Mayassi T, Bembinster LA, Bai L, Picard D, Anderson B, Scharf L, Kung JE, Sibener LV, Savage PB, Jabri B, Bendelac A, Adams EJ, Immunity. 2013 Dec 12;39(6):1032-42. doi: 10.1016/j.immuni.2013.11.001. Epub 2013, Nov 14. PMID:24239091
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (4ndm.pdb1.gz) 70 Kb
  • CSU: Contacts of Structural Units for 4NDM
  • Structure Factors (186 Kb)
  • Retrieve 4NDM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NDM from S2C, [Save to disk]
  • Re-refined 4ndm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NDM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ndm] [4ndm_A] [4ndm_B]
  • SWISS-PROT database:
  • Domains found in 4NDM: [IG_like] [IGc1] [IGv ] by SMART

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