4NDM Structure of the AB18.1 TCR date
authors Luoma, A.M., Adams, E.J.
compound source
symmetry
R_factor
R_Free 0.2797
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.01
Primary referenceCrystal Structure of Vdelta1 T Cell Receptor in Complex with CD1d-Sulfatide Shows MHC-like Recognition of a Self-Lipid by Human gammadelta T Cells., Luoma AM, Castro CD, Mayassi T, Bembinster LA, Bai L, Picard D, Anderson B, Scharf L, Kung JE, Sibener LV, Savage PB, Jabri B, Bendelac A, Adams EJ, Immunity. 2013 Dec 12;39(6):1032-42. doi: 10.1016/j.immuni.2013.11.001. Epub 2013, Nov 14. PMID:24239091
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (4ndm.pdb1.gz) 70 Kb
  • CSU: Contacts of Structural Units for 4NDM
  • Structure Factors (186 Kb)
  • Retrieve 4NDM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NDM from S2C, [Save to disk]
  • Re-refined 4ndm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NDM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4NDM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NDM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ndm_A] [4ndm] [4ndm_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4NDM: [IG_like] [IGc1] [IGv ] by SMART
    • Other resources with information on 4NDM
  • Community annotation for 4NDM at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science