4NDY Human MHF1-MHF2 DNA complex date 2013-10-28
authors Zhao, Q., Saro, D., Sachpatzidis, A., Sung, P., Xiong, Y.
compound source
symmetry
R_factor
R_Free 0.2791
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 7.00
Gene
Ontology
ChainFunctionProcessComponent
N, V, M, L, W, X, B, H, D, U


S, T, K, Q, C, A, J, I, R, G


Primary referenceThe MHF complex senses branched DNA by binding a pair of crossover DNA duplexes., Zhao Q, Saro D, Sachpatzidis A, Singh TR, Schlingman D, Zheng XF, Mack A, Tsai MS, Mochrie S, Regan L, Meetei AR, Sung P, Xiong Y, Nat Commun. 2014 Jan 3;5:2987. doi: 10.1038/ncomms3987. PMID:24390579
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (699 Kb) [Save to disk]
  • Biological Unit Coordinates (4ndy.pdb1.gz) 167 Kb
  • Biological Unit Coordinates (4ndy.pdb2.gz) 217 Kb
  • Biological Unit Coordinates (4ndy.pdb3.gz) 168 Kb
  • Biological Unit Coordinates (4ndy.pdb4.gz) 119 Kb
  • Biological Unit Coordinates (4ndy.pdb5.gz) 118 Kb
  • CSU: Contacts of Structural Units for 4NDY
  • Structure Factors (127 Kb)
  • Retrieve 4NDY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NDY from S2C, [Save to disk]
  • Re-refined 4ndy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NDY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4NDY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NDY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ndy_A] [4ndy_O] [4ndy_K] [4ndy_N] [4ndy_S] [4ndy_W] [4ndy_G] [4ndy_I] [4ndy_U] [4ndy_L] [4ndy_J] [4ndy_Q] [4ndy_P] [4ndy] [4ndy_V] [4ndy_T] [4ndy_B] [4ndy_C] [4ndy_H] [4ndy_F] [4ndy_X] [4ndy_E] [4ndy_R] [4ndy_M] [4ndy_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4NDY
  • Community annotation for 4NDY at PDBWiki (http://pdbwiki.org)

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