4NE1 Dna Binding Protein Dna date Oct 28, 2013
title Human Mhf1 Mhf2 Dna Complexes
authors Q.Zhao, D.Saro, A.Sachpatzidis, P.Sung, Y.Xiong
compound source
Molecule: Dna (26-Mer)
Chain: E, O, s, u
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Dna
Organism_taxid: 32630

Molecule: Dna (26-Mer)
Chain: F, P, t, v
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Dna
Organism_taxid: 32630

Molecule: Centromere Protein S
Chain: C, G, A, I, J, K, Q, R, S, T, Y, a, c, e, f, g, k, l
Synonym: Cenp-S, Apoptosis-Inducing Taf9-Like Domain-Contai Protein 1, Fancm-Interacting Histone Fold Protein 1, Fancon Associated Polypeptide Of 16 Kda;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Apitd1, Cenps, Faap16, Mhf1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 Rossetta 2

Molecule: Centromere Protein X
Chain: D, H, B, L, M, N, U, V, W, X, Z, b, d, h, I, j, o, p
Synonym: Cenp-X, Fancm-Interacting Histone Fold Protein 2, Anemia-Associated Polypeptide Of 10 Kda, Retinoic Acid-Indu D9 Protein Homolog, Stimulated By Retinoic Acid Gene 13 Pro Homolog;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Stra13, Cenpx, Faap10, Mhf2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 Rossetta 2
symmetry Space Group: P 3
R_factor 0.266 R_Free 0.295
crystal
cell
length a length b length c angle alpha angle beta angle gamma
252.390 252.390 131.360 90.00 90.00 120.00
method X-Ray Diffractionresolution 6.50 Å
Gene
Ontology
ChainFunctionProcessComponent
N, d, j, Z, W, B, H, q, b, D, U, r, V, M, h, L, i, X, p, o


S, a, T, K, Y, k, g, e, J, c, I, G, Q, C, f, A, n, m, l, R


Primary referenceThe MHF complex senses branched DNA by binding a pair of crossover DNA duplexes., Zhao Q, Saro D, Sachpatzidis A, Singh TR, Schlingman D, Zheng XF, Mack A, Tsai MS, Mochrie S, Regan L, Meetei AR, Sung P, Xiong Y, Nat Commun. 2014 Jan 3;5:2987. doi: 10.1038/ncomms3987. PMID:24390579
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1419 Kb) [Save to disk]
  • Biological Unit Coordinates (4ne1.pdb1.gz) 702 Kb
  • Biological Unit Coordinates (4ne1.pdb2.gz) 706 Kb
  • CSU: Contacts of Structural Units for 4NE1
  • Structure Factors (322 Kb)
  • Retrieve 4NE1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NE1 from S2C, [Save to disk]
  • Re-refined 4ne1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4NE1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4NE1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4NE1, from MSDmotif at EBI
  • Fold representative 4ne1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ne1] [4ne1_T] [4ne1_J] [4ne1_j] [4ne1_E] [4ne1_k] [4ne1_i] [4ne1_K] [4ne1_U] [4ne1_W] [4ne1_B] [4ne1_a] [4ne1_Y] [4ne1_c] [4ne1_S] [4ne1_V] [4ne1_L] [4ne1_D] [4ne1_q] [4ne1_Q] [4ne1_G] [4ne1_N] [4ne1_s] [4ne1_l] [4ne1_F] [4ne1_m] [4ne1_p] [4ne1_M] [4ne1_g] [4ne1_R] [4ne1_t] [4ne1_C] [4ne1_H] [4ne1_n] [4ne1_h] [4ne1_O] [4ne1_v] [4ne1_f] [4ne1_o] [4ne1_A] [4ne1_u] [4ne1_Z] [4ne1_d] [4ne1_I] [4ne1_e] [4ne1_r] [4ne1_P] [4ne1_X] [4ne1_b]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4NE1
  • Community annotation for 4NE1 at PDBWiki (http://pdbwiki.org)

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