4NFT Chaperone date Nov 01, 2013
title Crystal Structure Of Human Lnkh2b-H2a.Z-Anp32e
authors S.Shan, L.Pan, Z.Mao, W.Wang, J.Sun, Q.Dong, X.Liang, X.Ding, S.Chen Z.Zhang, B.Zhu, Z.Zhou
compound source
Molecule: Histone H2b Type 2-E, Histone H2a.Z
Chain: A, B, C, D
Fragment: Unp Residues 34-126, 16-114
Synonym: Histone H2b-Gl105, Histone H2b.Q, H2bq, H2az
Engineered: Yes
Other_details: Chimera Of H2b And H2a.Z
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: H2bfq, H2az
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Acidic Leucine-Rich Nuclear Phosphoprotein 32 Fam E;
Chain: E, F
Fragment: Unp Residues 185-232
Synonym: Anp32e, Lanp-Like Protein, Lanp-L
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Anp32e
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.220 R_Free 0.273
length a length b length c angle alpha angle beta angle gamma
76.412 104.297 124.743 90.00 99.15 90.00
method X-Ray Diffractionresolution 2.61 Å
A, D, C, B

Primary referenceAnp32e, a higher eukaryotic histone chaperone directs preferential recognition for H2A.Z., Mao Z, Pan L, Wang W, Sun J, Shan S, Dong Q, Liang X, Dai L, Ding X, Chen S, Zhang Z, Zhu B, Zhou Z, Cell Res. 2014 Apr;24(4):389-99. doi: 10.1038/cr.2014.30. Epub 2014 Mar 11. PMID:24613878
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (4nft.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (4nft.pdb2.gz) 31 Kb
  • Biological Unit Coordinates (4nft.pdb3.gz) 32 Kb
  • Biological Unit Coordinates (4nft.pdb4.gz) 32 Kb
  • CSU: Contacts of Structural Units for 4NFT
  • Structure Factors (661 Kb)
  • Retrieve 4NFT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NFT from S2C, [Save to disk]
  • Re-refined 4nft structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4NFT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4NFT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4NFT, from MSDmotif at EBI
  • Fold representative 4nft from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nft] [4nft_C] [4nft_F] [4nft_E] [4nft_D] [4nft_B] [4nft_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4NFT: [H2A] [H2B ] by SMART
  • Other resources with information on 4NFT
  • Community annotation for 4NFT at PDBWiki (http://pdbwiki.org)

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