4NH9 Correlation between chemotype-dependent binding conformations of HSP90 alpha/beta and isoform selectivity date 2013-11-04
authors Zuccola, H.J., Ernst, J.T.
compound source
symmetry
R_factor
R_Free 0.2770
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.77
ligand 2LC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCorrelation between chemotype-dependent binding conformations of HSP90alpha/beta and isoform selectivity-Implications for the structure-based design of HSP90alpha/beta selective inhibitors for treating neurodegenerative diseases., Ernst JT, Liu M, Zuccola H, Neubert T, Beaumont K, Turnbull A, Kallel A, Vought B, Stamos D, Bioorg Med Chem Lett. 2014 Jan 1;24(1):204-8. doi: 10.1016/j.bmcl.2013.11.036., Epub 2013 Nov 23. PMID:24332488
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (4nh9.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 4NH9
  • CSU: Contacts of Structural Units for 4NH9
  • Structure Factors (396 Kb)
  • Retrieve 4NH9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NH9 from S2C, [Save to disk]
  • Re-refined 4nh9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NH9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4NH9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NH9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nh9_A] [4nh9]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4NH9: [HATPase_c ] by SMART
    • Other resources with information on 4NH9
  • Community annotation for 4NH9 at PDBWiki (http://pdbwiki.org)

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